BMC Bioinformatics
"To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography."
Ecological Applications
"From metabarcoding to metaphylogeography: separating the wheat from the chaff."
Molecular Ecology
"Marine biomonitoring with eDNA: can metabarcoding of water samples cut it as a tool for surveying benthic communities?"
Diversity
"DNA Metabarcoding of Deep-Sea Sediment Communities Using COI: Community Assessment, Spatio-Temporal Patterns and Comparison with 18S rDNA."
Frontiers in Marine Science
"More Than Expected From Old Sponge Samples: A Natural Sampler DNA Metabarcoding Assessment of Marine Fish Diversity in Nha Trang Bay (Vietnam)."
Journal of Ecology
"Biogeographical scenarios modulate seagrass resistance to small-scale perturbations."
Journal of Biogeography
"Metabarcoding reveals high-resolution biogeographic and metaphylogeographic patterns through marine barriers."
PeerJ
"DnoisE: distance denoising by entropy. An open-source paralleliz-
able alternative for denoising sequence datasets."
STOTEN
"From biomarkers to community composition: negative effects of UV/chlorine-treated reclaimed urban wastewater on freshwater biota."
iScience
"A new sampling device for metabarcoding surveillance of port communities and detection of non-indigenous species."
Front. Mar. Sci.
"Metabarcoding the eukaryotic community of a threatened, iconic
Mediterranean habitat: Posidonia oceanica seagrass meadows."
Environmental DNA
"Investigating pelagic biodiversity and gelatinous zooplankton communities in the rapidly changing European Arctic:
an eDNA metabarcoding survey"
Scientific Reports
"Metabarcoding identifies macroalgal composition as a driver of benthic invertebrate assemblages in restored habitats"
Mar. Env. Res.
"Surveying marine biodiversity using eDNA metabarcoding of seawater and sediment in a high Arctic fjord during the polar night (Kongsfjorden, Svalbard)"
Diversity and Distributions
"Advancing Marine Conservation: Metabarcoding and Metaphylogeography for a Multi ‐Year Biomonitoring of Benthic Communities of National Parks Across Two Seas"
Scientific Reports
"De novo genome assembly, inversion detection, and worldwide adaptation on the invasive species Styela plicata"
Scientific Reports
"Spatio-temporal metabarcoding surveys in ports reveal homogenised communities of non-indigenous species with high genetic diversity and connectivity"
Front. Mar. Sci.
"From storms to warming seas: a long-term metabarcoding survey reveals seasonal dynamics and genetic resilience of non-indigenous species in port communities"
Mar. Pol. Bul.
"Nematode metabarcoding as an alternative to conventional benthic macrofauna monitoring of fish farming"